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ICU TopicsAnatomy

ICU · Anatomy

Neuroanatomy — Brainstem, Cranial Nerves & Spinal Cord

Also known as Neuroanatomy · Brainstem · Cranial nerves · Spinal cord tracts · Corticospinal tract · Spinothalamic tract · Artery of Adamkiewicz · Brainstem reflexes · Circle of Willis · Cerebral cortex · Basal ganglia · Blood-brain barrier · Ventricular system

Neuroanatomy for the ICU First Part: the cerebral cortex (frontal, parietal, temporal, occipital lobes and their functions), the basal ganglia and their direct/indirect pathways, the thalamus and hypothalamus, the limbic system, the brainstem (midbrain, pons, medulla) and its vital centres, the twelve cranial nerves with their main functions, the brainstem reflexes used in coma and brain-death assessment (pupillary, corneal, gag/cough, oculocephalic), the cerebellum, the ventricular system and CSF flow, the Circle of Willis and the MCA/ACA/PCA territories, the major spinal cord tracts (corticospinal, spinothalamic, dorsal columns) and their blood supply, the blood-brain barrier, and the autonomic nervous system.

high15 referencesUpdated 20 Aug 202623 min readVerification in progress

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The brainstem houses the vital centres, the cranial nerve nuclei, and the tracts — and a single lesion in it localises to its level on the cranial nerve exam alone. From the cortex down: four lobes whose function localises the deficit, basal ganglia whose direct pathway (D1) facilitates and indirect pathway (D2) suppresses movement, a thalamus that relays everything except smell, a brainstem whose three levels carry signature cranial nerve clusters (midbrain III-IV, pons V-VIII, medulla IX-XII), a Circle of Willis that is incomplete in half of people, three cord tracts that cross at different points (the Brown-Sequard pattern), and an anterior spinal artery that supplies the anterior two-thirds and spares the dorsal columns when it occludes.[1]

Meet the patient

A 54-year-old is on ICU day 4 after an out-of-hospital ventricular fibrillation arrest with a 25-minute down-time. Targeted temperature management at 36 C is done, he has been rewarmed 24 hours, and he is GCS 3 with absent brainstem reflexes on a midazolam and fentanyl infusion. The consultant asks you to outline the anatomical basis of the bedside brain-death examination.[1]

The question that decides this patient's trajectory is the question every neuro exam turns on: which cranial nerve sign localises the lesion — and at what brainstem level? The pupillary reflex tests the midbrain (CN II in, CN III out); the corneal tests the pons (V in, VII out); the gag and the apnoea test the medulla (IX, X, and the respiratory centre). Walk the brainstem from top to bottom and the anatomy tells you how deep the injury goes.[1][5]

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References15ShowHide
  1. [1]National Institute of Neurological Disorders and Stroke rt-PA Stroke Study Group Tissue plasminogen activator for acute ischemic stroke N Engl J Med, 1995.PMID 7477192
  2. [2]Hacke W, Kaste M, Bluhmki E, et al. Thrombolysis with alteplase 3 to 4.5 hours after acute ischemic stroke N Engl J Med, 2008.PMID 18815396
  3. [3]Nogueira RG, Jadhav AP, Haussen DC, et al. Thrombectomy 6 to 24 Hours after Stroke with a Mismatch between Deficit and Infarct N Engl J Med, 2018.PMID 29129157
  4. [4]Albers GW, Marks MP, Kemp S, et al. Thrombectomy for Stroke at 6 to 16 Hours with Selection by Perfusion Imaging N Engl J Med, 2018.PMID 29364767
  5. [5]Wijdicks EF, Varelas PN, Gronseth GS, Greer DM (American Academy of Neurology) Evidence-based guideline update: determining brain death in adults: report of the Quality Standards Subcommittee of the American Academy of Neurology Neurology, 2010.PMID 20530327
  6. [6]Molyneux A, Kerr R, Stratton I, et al. International Subarachnoid Aneurysm Trial (ISAT) of neurosurgical clipping versus endovascular coiling in 2143 patients with ruptured intracranial aneurysms: a randomised trial Lancet, 2002.PMID 12414200
  7. [7]Margetis K, Weisbrod LJ, Launico MV Neuroanatomy, Cerebrospinal Fluid StatPearls, 2026.PMID 29262203
  8. [8]Sakka L, Coll G, Chazal J Anatomy and physiology of cerebrospinal fluid Eur Ann Otorhinolaryngol Head Neck Dis, 2011.PMID 22100360
  9. [9]Bögli SY, Olakorede I, Beqiri E, et al. Cerebral perfusion pressure targets after traumatic brain injury: a reappraisal Crit Care, 2025.PMID 40399968
  10. [10]Steiner LA, Czosnyka M, Piechnik SK, et al. Continuous monitoring of cerebrovascular pressure reactivity allows determination of optimal cerebral perfusion pressure in patients with traumatic brain injury Crit Care Med, 2002.PMID 11940737
  11. [11]Sorrentino E, Diedler J, Kasprowicz M, et al. Critical thresholds for cerebrovascular reactivity after traumatic brain injury Neurocrit Care, 2012.PMID 21964774
  12. [12]Krabbe-Hartkamp MJ, van der Grond J, de Leeuw FE, et al. Circle of Willis: morphologic variation on three-dimensional time-of-flight MR angiograms Radiology, 1998.PMID 9530305
  13. [13]Greer DM, Kirschen MP, Lewis A, et al. Pediatric and Adult Brain Death/Death by Neurologic Criteria Consensus Guideline Neurology, 2023.PMID 37821233
  14. [14]Pickard JD, Murray GD, Illingworth R, et al. Effect of oral nimodipine on cerebral infarction and outcome after subarachnoid haemorrhage: British aneurysm nimodipine trial BMJ, 1989.PMID 2496789
  15. [15]Hall WA, Munakomi S Uncal Herniation StatPearls, 2026.PMID 30725793

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