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Anaes TopicsApplied cardiovascular & respiratory physiology

Anaes · Applied cardiovascular & respiratory physiology

Pharmacogenetics and variability in drug response

Also known as Pharmacogenetics · Pharmacogenomics · Drug response variability · CYP2D6 polymorphism · Pseudocholinesterase deficiency · Malignant hyperthermia genetics

Patients vary enormously in their response to the same dose of a drug, and a major, inherited component of that variability is pharmacogenetics — the influence of genetic differences on drug absorption, distribution, metabolism, excretion and effect. The framework rests on six exam-critical ideas. First, variability is multifactorial: genetic (the largest single factor for many drugs), age (the neonate and the elderly at the extremes), sex and body habitus, organ function (hepatic and renal), and drug interactions all contribute, but genetics explains a large fraction of the inter-individual difference in drug handling. Second, the cytochrome P450 enzymes are highly polymorphic and are classified into metaboliser phenotypes — poor, intermediate, extensive (normal) and ultra-rapid — by the activity of the enzyme variant a person inherits; about 5 to 10 percent of Caucasians are CYP2D6 poor metabolisers, while CYP2D6 ultra-rapid metabolisers are common in North African and Middle Eastern populations. Third, the clinical consequences are dramatic for prodrugs and drugs with a narrow therapeutic index: a CYP2D6 poor metaboliser given codeine converts almost none of it to morphine and gets no analgesia, while an ultra-rapid metaboliser can generate lethal morphine concentrations from a normal codeine dose — which is why codeine is now contraindicated in children and breastfeeding mothers. Fourth, several anaesthesia-critical enzymes are genetically determined: butyrylcholinesterase (pseudocholinesterase) deficiency causes prolonged paralysis after suxamethonium or mivacurium; thiopurine methyltransferase (TPMT) and NUDT15 deficiency predict catastrophic myelosuppression from azathioprine and 6-mercaptopurine; and the ryanodine receptor (RYR1) variants underlie susceptibility to malignant hyperthermia. Fifth, pharmacogenetics also guides dosing of common drugs: warfarin dose depends on CYP2C9 (metabolism) and VKORC1 (sensitivity) genotype, and clopidogrel efficacy depends on CYP2C19 status (poor metabolisers cannot activate the prodrug and have a higher risk of stent thrombosis). Sixth, pharmacogenetic variation interacts with the other sources of variability — the neonate is both genetically and developmentally a slow metaboliser — so safe prescribing integrates all of them. Built on the Ontario CYP metaboliser-distribution cohort (Thamilselvan 2026, n-8280 psychotropic cohort, PM plus UM extremes about 8 percent each for CYP2C19 and CYP2D6, Caribbean 24 percent vs Latin 7 percent, 5.1 percent normal across all enzymes), the pre-emptive-testing discontinuation cohort (Baye 2026, n-5808 patients and 8571 orders, 51 percent discontinued pre-testing, CYP2C19 increased HR 1.17 for citalopram/escitalopram/sertraline, venlafaxine HR 1.23), the elderly mivacurium secondary analysis (Kempff-Andersen 2026, age 80-plus, title-anchored and abstract-less), the Arab genotype-guided warfarin model (Fahmi 2026, n-405, VKORC1 plus CYP2C9 model R2 51.6 percent, MAE 9.3 vs 12.4 mg/week p 0.03 vs Gage), the paediatric NUDT15 myelosuppression brief report (Fry 2026, 4-year-old ALL with NUDT15 star-1/star-6, standard mercaptopurine not tolerated down to 27 percent, CPIC reclassification to intermediate), the paediatric G6PD anaesthetic case (Khaliq 2026, 23-month-old 8 kg coin esophagoscopy, oxidant avoidance with 24-hour surveillance), the familial RYR1 residual-risk comment (Gulen 2026, title-anchored and abstract-less), and the CRISPR CYP2C19 point-of-care assay (Schubert 2026, star-2/star-3/star-17, n-110, 97.3/100/99.1 percent vs Sanger). Phenotype frequencies, dibucaine numbers, inheritance patterns, and contraindication ages below are viva teaching carried with honesty notes, not numbers from these abstracts.

high8 referencesUpdated 26 July 20269 min readVerification in progress

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Red flags

  • Genetics is a major source of inter-individual variability for many drugs (single-largest framing is viva shorthand, not from the retrieved cohort). CYP enzymes classify into poor/intermediate/normal/rapid/ultra-rapid by diplotype in the retrieved Ontario cohort — the four-phenotype shorthand below is teaching mapped onto it.
  • CYP2D6 poor metabolisers get NO analgesia from codeine (they cannot convert it to morphine); CYP2D6 ultra-rapid metabolisers can generate dangerous morphine concentrations from a normal codeine dose. Under-12 and breastfeeding contraindications are formulary teaching, not in the retrieved cohort abstract.
  • Butyrylcholinesterase (pseudocholinesterase) deficiency is viva-taught as autosomal recessive and causes prolonged paralysis after suxamethonium or mivacurium (hours instead of minutes in teaching). It is the classic reason for unexpected delayed recovery, screened with the dibucaine number (teaching values, not from the abstract-less retrieved record).
  • Warfarin dosing depends on genotype — CYP2C9 star-2/star-3 and VKORC1 -1639G-to-A plus clinical factors (Arab n-405 model R2 51.6 percent, MAE 9.3 vs 12.4 mg/week). Early-bleeding benefit is protocol teaching beyond the derivation abstract.
  • Malignant hyperthermia susceptibility is viva-taught as autosomal dominant (RYR1 commonest, CACNA1S less common), producing uncontrolled skeletal-muscle calcium release on suxamethonium or volatile exposure. Avoid both in known or suspected MH; the retrieved RYR1 record is a title-anchored residual-risk comment.
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Practise this topic16 MCQs with explanations

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ANZCAFRCAABAEDAICFCAIFCA_SA

Red flags

  • Genetics is a major source of inter-individual variability for many drugs (single-largest framing is viva shorthand, not from the retrieved cohort). CYP enzymes classify into poor/intermediate/normal/rapid/ultra-rapid by diplotype in the retrieved Ontario cohort — the four-phenotype shorthand below is teaching mapped onto it.
  • CYP2D6 poor metabolisers get NO analgesia from codeine (they cannot convert it to morphine); CYP2D6 ultra-rapid metabolisers can generate dangerous morphine concentrations from a normal codeine dose. Under-12 and breastfeeding contraindications are formulary teaching, not in the retrieved cohort abstract.
  • Butyrylcholinesterase (pseudocholinesterase) deficiency is viva-taught as autosomal recessive and causes prolonged paralysis after suxamethonium or mivacurium (hours instead of minutes in teaching). It is the classic reason for unexpected delayed recovery, screened with the dibucaine number (teaching values, not from the abstract-less retrieved record).
  • Warfarin dosing depends on genotype — CYP2C9 star-2/star-3 and VKORC1 -1639G-to-A plus clinical factors (Arab n-405 model R2 51.6 percent, MAE 9.3 vs 12.4 mg/week). Early-bleeding benefit is protocol teaching beyond the derivation abstract.
  • Malignant hyperthermia susceptibility is viva-taught as autosomal dominant (RYR1 commonest, CACNA1S less common), producing uncontrolled skeletal-muscle calcium release on suxamethonium or volatile exposure. Avoid both in known or suspected MH; the retrieved RYR1 record is a title-anchored residual-risk comment.
The one-line answer

Pharmacogenetics is the inherited, DNA-encoded slice of drug-response variability — germline differences in the enzymes, receptors, and transporters that determine what a dose does. The six named anaesthesia syndromes are: butyrylcholinesterase deficiency (prolonged mivacurium in the elderly secondary analysis, title-anchored [3]), malignant hyperthermia susceptibility (residual risk after familial RYR1 testing, title-anchored comment [7]), CYP2D6/CYP2C19 distribution (Ontario n-8280 cohort, extremes about 8 percent each [1]), CYP2C9 plus VKORC1 (Arab n-405 warfarin model [4]), G6PD deficiency (paediatric oxidant-avoidance case [6]), and acute porphyrias (viva teaching, no retrieved abstract owns it). Genetics explains susceptibility, not every fever under anaesthesia — titrate always, because genotype is rarely available preoperatively.[1][3][4][6][7]

Meet the patient

A 28-year-old man for appendicectomy tells you at the preoperative visit that his father "could not breathe for hours" after a hernia operation and nearly died. No further details are available. He is otherwise fit and well.[3]

This is pharmacogenetics walking into your theatre. A family history of prolonged apnoea after suxamethonium raises butyrylcholinesterase deficiency; a family history of a "bad reaction" under anaesthesia raises malignant hyperthermia susceptibility (viva teaching; [3] and [7] are title-anchored abstract-less records as scoped below). Neither is excluded by a normal patient — and neither is confirmed without testing. Your plan changes on history alone: avoid suxamethonium, use a trigger-free technique if MH is possible, and prepare for prolonged monitoring.[3][7]

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References8ShowHide
  1. [1]Thamilselvan M, et al. Distribution of Cytochrome P450 Metabolizer Status and Allelic Variants in Individuals with Mental Health Disorders in Ontario, Canada: Répartition du statut métabolique du cytochrome P450 et des variantes alléliques chez les personnes atteintes de problèmes de santé mentale en Ontario, au Canada Can J Psychiatry, 2026.PMID 42240275
  2. [2]Baye JF, et al. Genotype influences antidepressant discontinuation in a pre-emptive pharmacogenetic testing population Pharmacogenomics J, 2026.PMID 42168153
  3. [3]Kempff-Andersen S, et al. Butyrylcholinesterase activity and prolonged duration of action of mivacurium in elderly patients (≥80 years): A secondary analysis of a clinical trial Eur J Anaesthesiol, 2026.PMID 42298973
  4. [4]Fahmi AM, et al. Derivation and Validation of a Genotype- Guided Warfarin Dosing Model in a Mixed Arab Population Clin Appl Thromb Hemost, 2026.PMID 42262158
  5. [5]Fry J, et al. Severe Thiopurine-Induced Myelosuppression in a Pediatric Acute Lymphoblastic Leukemia Patient With the NUDT15 *1/*6 Genotype: A Brief Report Clin Transl Sci, 2026.PMID 42286409
  6. [6]Khaliq A, et al. Anesthetic Management of a Pediatric Patient With Glucose-6-Phosphate Dehydrogenase Deficiency Undergoing Emergency Rigid Esophagoscopy: A Case Report Cureus, 2026.PMID 42281694
  7. [7]Gülen A Residual risk after familial RYR1 testing: interpreting malignant hyperthermia susceptibility in the context of regional testing strategies Eur J Hum Genet, 2026.PMID 42321436
  8. [8]Schubert AJ, et al. CRISPR-Based Assay for Point-of-Care Pharmacogenetic CYP2C19 Genotyping ACS Sens, 2026.PMID 42345496

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